Scaffold Ga0209807_1005260

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0209807_1005260

Scaffold Ga0209807_1005260

Overview

Basic Information
Taxon OID	3300026530 Open in IMG/M
Scaffold ID	Ga0209807_1005260 Open in IMG/M
Source Dataset Name	Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6369
Total Scaffold Genes	10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	6 (60.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Candidatus Rokubacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location Name	USA: California: Angelo Coastal Reserve
Coordinates	Lat. (^o)	39.7392	Long. (^o)	-123.6308	Alt. (m)		Depth (m)	0
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F013226	Metagenome	273	Y
F031920	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0209807_100526010	F031920	N/A	LYALAHYDIMPWLGLTFRYGLFNDFDAARTGVAQVLQSFTIAPIVHLSRLIPDLRPLGAAYARTRHPIDWVDVRLEYRLNHSNEPVFSSAKPGVPITSADETAHQVTLQFVVNY
Ga0209807_10052608	F013226	AGGAG	MKIPCRLVAATLIWLCLVAPARAHITPPVVLVSDRDAVVGLLTGARRFFVREVRLTPAEKQTIRQQTGWNPEDDFYRFYIGRDDQGRVVAATVFLTEFTIHGPVRVAVALGPDGKVKGATVVELTEETYPWVKPLLDRNFTRDYVGRDAHGTFAVSAGGGESMAQFYGDIVASLIQHAAALYETAVLKRGDAA

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