NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209807_1000092

Scaffold Ga0209807_1000092


Overview

Basic Information
Taxon OID3300026530 Open in IMG/M
Scaffold IDGa0209807_1000092 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_154 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)36304
Total Scaffold Genes45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (62.22%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020474Metagenome224Y
F026524Metagenome / Metatranscriptome197Y
F033381Metagenome177Y
F066641Metagenome / Metatranscriptome126N

Sequences

Protein IDFamilyRBSSequence
Ga0209807_100009216F020474AGGAGGVTEDDVEDIEVCEPIHECPDCGSVTIRGKWSIEGARTLTHAARMLRDYAHELEHMRASGLELASPVEADYGVVRPGGVPPDDALEVLDDE
Ga0209807_100009217F033381AGGAMEESWRQMLDDQWLHDCMEEWRDYGHLIMRAKWTMDGATTLAEAAARFRERADELDRLARAGFELDQPVNDDYAFIVRPGEDSPMRLVEEDE
Ga0209807_10000922F066641GGAGGMRRFKILAIGTLLTLGALAGTALGKEGAVTKLDALPPGGLHAGQIIPVGFMILMDGVEPYKADVAEIVIRNGTGKVLSYPATPQGPAGHYVANVYFPAAGTYTWQATQGTYFAPFDLGTIAVLGPVTSTATEATPASAPATNDPLSQAIPIFAGLVAIGGTIRLAQLLRSHRRISAAA
Ga0209807_100009225F026524N/AMADLIVTTLARMERSEPARLAALWAFTVLLALAFLALLVGDQVRAASL
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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