NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228607_1176778

Scaffold Ga0228607_1176778


Overview

Basic Information
Taxon OID3300026517 Open in IMG/M
Scaffold IDGa0228607_1176778 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 8D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)507
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020254Metagenome / Metatranscriptome225Y
F049421Metagenome / Metatranscriptome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0228607_11767781F020254N/AEEESSMETLWTVSAPAWQWIVGTAVALYVWEEYLEHVWYKFKHWVLNEPHKTK
Ga0228607_11767782F049421N/AVIEVIVAIIGLGVGDYADPLDLNLEDKDKKVIMQTACEETTTQDAYGQVSTIKTCRTMKTIHTNEEKD

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