NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0247587_1045172

Scaffold Ga0247587_1045172


Overview

Basic Information
Taxon OID3300026504 Open in IMG/M
Scaffold IDGa0247587_1045172 Open in IMG/M
Source Dataset NameMetatranscriptome of seawater microbial communities from Monterey Bay, California, United States - 46R (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1073
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014147Metagenome / Metatranscriptome265N
F051922Metagenome / Metatranscriptome143N

Sequences

Protein IDFamilyRBSSequence
Ga0247587_10451722F051922N/AMKRLSLYERLNPDVKAKLIANQLDYKFTVGMVIAKLDSTLFWDELTVRDISNLVVFSDSDMPIDTTTMLRGDSNLIQPQNEVI
Ga0247587_10451723F014147N/ALHEKFGVNVMSMEGIYSAILVDGTHGTDYISYHDTSPDWVFGVHPKLQAFIDAHGWECEWRNSEVLDLYPGHDWTSDFSEAQLASHWNAMCDYITAPQDHVYANDDEAFEMLQLTIRQTVAASNNDRYNFDDKWLTLDGYGNPMSFNDLTQFIDVPELEEYLIAHALI

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