Scaffold Ga0257153_1009449

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0257153_1009449

Scaffold Ga0257153_1009449

Overview

Basic Information
Taxon OID	3300026490 Open in IMG/M
Scaffold ID	Ga0257153_1009449 Open in IMG/M
Source Dataset Name	Soil microbial communities from H.J. Andrews Experimental Forest, Oregon, United States - DW-10-A
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1945
Total Scaffold Genes	4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (100.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Soil Microbial Communities From H.J. Andrews Experimental Forest, Oregon, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	44.23	Long. (^o)	-122.22	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F000217	Metagenome / Metatranscriptome	1557	Y
F000440	Metagenome / Metatranscriptome	1137	Y
F001138	Metagenome / Metatranscriptome	767	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0257153_10094492	F000440	GAG	MLSGPGSNRQVMRMQTKFTPEQRAMKHLKRVAALTGAAPVHGDSYLLKVGRRNFLVGYKFVRLISHRCKSTCFSVATDPDMPSAEVVASALLQLKSNPRLFKKWRKQQGLTFKANGKMFRDAYRLTRDEA
Ga0257153_10094493	F001138	AGG	MCMAPAILSAIAFLALVVWRFVFTGAYRRPLARAIAPRQQRHGDFLAEGLHILELAGAQAIADGLLENGANDLDRLDPEECAKRYLQRIAALTGATQMGDTYILDVEKTRFHVRSRLVKRLQDTTDPECTFEETCFYPLHKDMPLAEEIATALLQLKNNPALFDKWTAQRGAIRADGYAFRPGQ
Ga0257153_10094494	F000217	AGGAG	MNAKILTFSLRGDTTLLEYDPATADMEEVNKLIAEYEDKTGAQPFDMATGERIEKVTREQNEVLMVHPIAGG

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