NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0228622_1069461

Scaffold Ga0228622_1069461


Overview

Basic Information
Taxon OID3300026479 Open in IMG/M
Scaffold IDGa0228622_1069461 Open in IMG/M
Source Dataset NameSeawater microbial communities from Monterey Bay, California, United States - 26D
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)769
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Seawater → Seawater Microbial Communities From Monterey Bay, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)36.8313Long. (o)-121.9047Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019909Metagenome / Metatranscriptome227Y
F069998Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0228622_10694612F019909N/AMTNFEQHIGQKLPQAILDHIDEHTTDELYNQAHKLKFDSICPVVMENDSPELRKELKEASELLFKYIDFQSVTDEIWNSEN
Ga0228622_10694613F069998N/ATTMTKKELIDFMSDYPDDAPVVIEVHDTTLYEDLYDFTFDGVSWTRTFPNGTQTEMHELRLCALNHIEK

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