NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0255360_1001387

Scaffold Ga0255360_1001387


Overview

Basic Information
Taxon OID3300026365 Open in IMG/M
Scaffold IDGa0255360_1001387 Open in IMG/M
Source Dataset NamePeat soil microbial communities from Stordalen Mire, Sweden - G.F.S.T50
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3806
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Peat → Unclassified → Unclassified → Soil → Peatland Microbial Communities From Stordalen Mire, Sweden

Source Dataset Sampling Location
Location NameSweden: Norrbotten County, Stordalen Mire
CoordinatesLat. (o)68.3533Long. (o)19.0466Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F085859Metagenome111Y
F092956Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0255360_10013871F092956AGGAGGMPSKVSRMHDSDDRMLARYQHLYKRALNVKALQLQKIQRAETRELCISALFKAVVICNNTLKEMDVKQYEAGPEQSLLEK
Ga0255360_10013873F085859N/AMTTQEREPKEPSFETGQEALIYEVERACGQLNKLKDLQLDEPFLRAVAADIRAHMDHLGASLQELTEPCG

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