NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209804_1044568

Scaffold Ga0209804_1044568


Overview

Basic Information
Taxon OID3300026335 Open in IMG/M
Scaffold IDGa0209804_1044568 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_139 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2190
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007429Metagenome / Metatranscriptome351Y
F068664Metagenome124Y
F072787Metagenome121N

Sequences

Protein IDFamilyRBSSequence
Ga0209804_10445682F072787GAGGMSSQEVGPEWVLSSFTSPSHGTQDHINELVAVARQLWPRIQAHAVKEQPGQSPDEAIAIACDVWETALRSVGKTIVRSNGRGIQIRDIDAYLFGIFIHRFNRALRKERKRRQMFQYFASTRELELLRQAHDSRAARDIDLSVQAKEAVQNLDEWPRKVWIARKYGYSFPEIASFLGMSEAQVKLRFRYALARLREKLGL
Ga0209804_10445683F068664AGGCGGMALAAAAVLLIVIGGLLLLRNRPSVQTATVTIDLRERSIARGENPAERNQQPLELSRETKHLVLDLPIGSKEGSYEVALVSGGGEQVRGTTGIAQLENHTAILKADIDLAGVSPGSYFLGVRQPGMEWSRYPIRVK
Ga0209804_10445684F007429AGTAGMKKQKPKKSRTAPKPKMQTDRLKGWTKIAQFLGQPIAVAQRWARSGMPMKREGRFITASPEELSRYLGREAGLDVPVHIASEDMDLSADLKRALSYARAGTTGKKRSSG
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Institute for Fundamental Biomedical Research
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