NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0209267_1117922

Scaffold Ga0209267_1117922


Overview

Basic Information
Taxon OID3300026331 Open in IMG/M
Scaffold IDGa0209267_1117922 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_137 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1120
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040221Metagenome162N
F049810Metagenome146Y

Sequences

Protein IDFamilyRBSSequence
Ga0209267_11179221F040221GGAGGMTEPALGIAGVVLLVLAITALFLRPRRSRGRVVDIGLAVGTGLLGLAIGLVVAERVNGPAIVALAAPEQPPDPPQAATQGPRYVETRLSLQFPIDDEYPSGSEGANVADWYAFRNSISYAPGPGEKTDKTQDQKLKLLADVSWSWLIVIAFDQPTRYSRLNVSFTGGELPYYQIARQDPHYAVIHVQGRIPAGQMEITTSE
Ga0209267_11179222F049810AGGAMIACGAGAGVMNRTKWMRLSVRDLGDVIRWAGAQNAREISEFRYRVVNGREIVSFRLVPRYAIDIGAREIIVVAYARLLGWRAKLRDFRRIAGVVGRRLEQTLGVATAAPVLPLPAHRLAKLQPVTAATRPRIQPRQR
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.