NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209375_1061407

Scaffold Ga0209375_1061407


Overview

Basic Information
Taxon OID3300026329 Open in IMG/M
Scaffold IDGa0209375_1061407 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_131 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1821
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F050278Metagenome / Metatranscriptome145Y
F074639Metagenome119N

Sequences

Protein IDFamilyRBSSequence
Ga0209375_10614071F074639N/AMLSSHGSGESRSFAMNRVQVRFVALLGAAALAAPALGETGDHVACYKVKDRAKHGVFTLTVTNAGVTQACRVTVPARLGCLATQVSAVAPTPPGDEPSPGPAGDFLCYPLVCPRPFPSAAQMTDELGGERVVDFKRAQLLCAPAARGPATIGSSTTTTTVPPEPCDFNSSDRKCEGTCGDGGHCSAVASGGACECRKTPCGDADSPSCDGFCAPDEACVFTVTDCSCMSIP
Ga0209375_10614072F050278AGGAGGMTGQVTLMLGVVACAAILAAGESSFAKGANEEICRQFHQECSEARAQGARDAGICNVERLECKTDPTDQPAAGVGKRPRGMDARPDARDDRERSIGPWASVLSASDAVLPRLRRVA
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