NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209470_1016626

Scaffold Ga0209470_1016626


Overview

Basic Information
Taxon OID3300026324 Open in IMG/M
Scaffold IDGa0209470_1016626 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_125 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4118
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (71.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011378Metagenome291Y
F038621Metagenome165N
F039541Metagenome163N

Sequences

Protein IDFamilyRBSSequence
Ga0209470_10166264F038621AGGAGMPQSRAVRPLLLVAALVAGAIHAPRARADTASDPVPVLPGDTFLSPGPRALGFKDGLAADPSTIGNFRGLVALAYMRGRVRDSSGRRWLMVNDMRLFQGDYVAADGIQRQGTFAFV
Ga0209470_10166265F011378N/AVHDFTGGITPAGLVWTVRLPDGALTTPRGNVVMVDARDVAVVDDRAGPAGETPATVSFQMTWKGRGGRRRLAAASPAFAGQFFRHARAQGTFSGAEAGFDFASAMRGRARSTFAEFGTEQNGSFLAAAGQCPRCRAP
Ga0209470_10166266F039541AGGAGGMIRMPAAAAAAALVSLLTLVPGARGDTSIAAIVDHPDDYANLQVTVVGIVAAPSLGYLGESFYTLFGDQRRINVVSHSSAPAVGDRLEVTAKVGRRPPDEEFDFPPVLVESSRQPAP
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