| Basic Information | |
|---|---|
| Taxon OID | 3300026319 Open in IMG/M |
| Scaffold ID | Ga0209647_1000897 Open in IMG/M |
| Source Dataset Name | Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_60cm (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 26715 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (77.78%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Laytonville, California, USA | |||||||
| Coordinates | Lat. (o) | 39.7392 | Long. (o) | -123.6308 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005127 | Metagenome / Metatranscriptome | 411 | Y |
| F007193 | Metagenome / Metatranscriptome | 356 | Y |
| F049806 | Metagenome / Metatranscriptome | 146 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0209647_100089713 | F007193 | GAG | MIAPALERAPRMLLVIGEDEQGLPTETIILEPSMSRLYDSLRAWLEVVLPNWLGRPLGLTRPSHAGPLPASEPVLIDVQLRWAGL |
| Ga0209647_10008974 | F049806 | GGAG | MLRILVAWILSALLAGCSGSSRLEEIVPDWASAPPRHEATQYAAPKNQSRGRASLAAEQRGTPAVDPRTTPAAEPRATPAPEPQEAKKTEGQSPSEE |
| Ga0209647_10008975 | F005127 | GGAGG | MPSFSDVKYVYDPEALKIMGAAFDTVCQAFPPDLKEHEGTRRRLALLILRHMDRGEHEVARLSDLALLDFMRPLALAQR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |