NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209471_1007736

Scaffold Ga0209471_1007736


Overview

Basic Information
Taxon OID3300026318 Open in IMG/M
Scaffold IDGa0209471_1007736 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_128 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5743
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004518Metagenome434Y
F012652Metagenome278Y
F061709Metagenome131Y

Sequences

Protein IDFamilyRBSSequence
Ga0209471_10077362F061709N/AMIRLPADVVRALRRRAATADVTIAEAARQLMQPTDVKHALGLLEHVAWLHARLVRRRDDLVSVFSDGDADPKTVDRAIDALAVLLKDWPEETGYDFAAHGMGQPQ
Ga0209471_10077363F012652GGAGMKTKTTKTKLPRPFRNFPDAIDEILHGYGPRARIVVLWRQLDRKQDVWTYLGRLQPEQCEIEMIGDRFGGGWYRAKILGAWDRERRREEYFEQVAFGIDQQWWPMTAETRERIRKQHGM
Ga0209471_10077364F004518GGAMPDARPVPDLPDGLPPWLAAFVADAQRETDVLRDNGAEQAAAARVALLRKLIAAAQLYFDTELDAAEAASETGRCEETIRRAVRDGTIPDRRANPKGRHRVRRGDLRKLAAPPAGPYDPGADAQDIARLRRKV
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