NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209055_1001693

Scaffold Ga0209055_1001693


Overview

Basic Information
Taxon OID3300026309 Open in IMG/M
Scaffold IDGa0209055_1001693 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_110 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14374
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)19 (67.86%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000309Metagenome / Metatranscriptome1327Y
F000828Metagenome / Metatranscriptome872Y
F010187Metagenome / Metatranscriptome307Y
F047702Metagenome149Y

Sequences

Protein IDFamilyRBSSequence
Ga0209055_100169311F047702N/AMKKPHLEVTQNDKSGLHGKCASCAAYFTIAGPGLARNPAAAMKTLQRQFDKHCRQVHMREDASQERTSS
Ga0209055_100169317F000828N/AMVQMKETETSIFEEQYRVVAVESDRLLVRGIFSGEVLTIINSEPETPLAQADYPPGTLIALTDPSTAPLN
Ga0209055_100169318F000309GGAMKPSEHQSLDQILESAVVVSWADLMRGAQTGLIHIEYGFAPSGTLDYLQVWSSITRGHWLLACAYWMSASKFHYTGIHFDNGYQSEGLAHTLEVVMQHQNAFALPPNLGRQGLLQITTPTEEESTAAAASVSEAYDRISSGLGQQAPA
Ga0209055_100169320F010187AGGAGGMHPEDLMKADLLSEVVLLGGGEVIFISLLLIVVIALTRV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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