NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209265_1017327

Scaffold Ga0209265_1017327


Overview

Basic Information
Taxon OID3300026308 Open in IMG/M
Scaffold IDGa0209265_1017327 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_103 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2235
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameUSA: California: Angelo Coastal Reserve
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F025416Metagenome / Metatranscriptome202Y
F056502Metagenome / Metatranscriptome137Y

Sequences

Protein IDFamilyRBSSequence
Ga0209265_10173273F025416AGGAGGVQKHSREGYNLAALLFFFLFLDNLLRRAEGQGWKGFWLCSGRFEVVVQVVLFGMLTLVAQFVYWSRIVSGLNQEHA
Ga0209265_10173274F056502GAGMSSKQEHPIQAMGFWVFGFLSVVLAVLKLTVAGYWSWWRVMLPFLAFLGHNAVYLWLASYASVG

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