NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209240_1008691

Scaffold Ga0209240_1008691


Overview

Basic Information
Taxon OID3300026304 Open in IMG/M
Scaffold IDGa0209240_1008691 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3840
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002001Metagenome / Metatranscriptome606Y
F010705Metagenome300Y
F010717Metagenome / Metatranscriptome300Y
F051421Metagenome / Metatranscriptome144Y

Sequences

Protein IDFamilyRBSSequence
Ga0209240_10086912F010717AGGAMGKRPNTAPRRSGSPQPDRRRALELLAASRDGCTEAIMIAHGFTVPQMVELVRAGLATAYTRRVIVARHTVEIAWVRITAAGRRALADQPRL
Ga0209240_10086913F010705N/AMLPPAYLSKKLISPVPTKDGGTLRTIREAWEYMAAISKEREQRRHWQHLRKLILEEADVAAISWQFRLAVLKDAKLDVAGDQVLAKEAEAQERS
Ga0209240_10086916F051421AGGMAMKATWHVKLTRREHSRTAFTDYVDRVPKRGAITTLHVDGEQVKLRIDVVREQTSYTRAAASLGVFDVLATEID
Ga0209240_10086917F002001GAGMLRAYLSQKLTRPLPTKDGGTLRTAAEARAYMLALPKDRELNARWQRAAELLLAEADVAAFSKQVELALFMDANLDVAKIAAA
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