NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209240_1002066

Scaffold Ga0209240_1002066


Overview

Basic Information
Taxon OID3300026304 Open in IMG/M
Scaffold IDGa0209240_1002066 Open in IMG/M
Source Dataset NameGrasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample 9_17_2013_80cm (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7705
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Chloroflexi(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location
Location NameLaytonville, California, USA
CoordinatesLat. (o)39.7392Long. (o)-123.6308Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026944Metagenome / Metatranscriptome196Y
F071468Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0209240_10020666F026944AGGAGMNNSLSRRVPRLREPGPALQLLASVTLVFLLAFGADVLLQWAVGLFVAGIVEQDTFFYSAVKQQDAFAQTLLAIIKLVSFVALGVGFVAMLVFFFTSFYEISRLQQPFQSGAKRLLKATLLSLRGIATVTFMFLVVTAIYELLLRIVGNQPPFFLLAALVTTSMYVFILAYGLFDYAKELRGIVSGAVAKRRNMHHGGRSRRGT
Ga0209240_10020667F071468AGGAGGMAGEVEEEHETRGVNTNMGYLQRTLQATLTIWLSLAVVIIAVFGLSESLRVAGVDRDENVLITFLVALGLNVLALWLLPRSFLTLKEEGQDGVRQRYIQHVLFALSVIWAILAAIILVAIGLYNALRVAGVEGDENVLITFIVSLGLILLALWLLPRSFLTQ
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