NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208879_1139075

Scaffold Ga0208879_1139075


Overview

Basic Information
Taxon OID3300026253 Open in IMG/M
Scaffold IDGa0208879_1139075 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_Bottom_ad_5009_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)995
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003091Metagenome / Metatranscriptome508Y
F012582Metagenome / Metatranscriptome279Y
F081450Metagenome114Y

Sequences

Protein IDFamilyRBSSequence
Ga0208879_11390752F003091AGGAGMTMLPQKPITKPGEGKERQKYFSEERYLEERYQITVGLKGPKRLEGEEFEDYKLRMKAENGLLKEYLRGVWVKKEE
Ga0208879_11390753F012582AGGAMTEFHKKLRHLSTTMLHWAEDNKIQRKVVEGIAGDYEIPQRNGVDWKEDFKFVTKLDRMLSSDIGDKLKKKEMKMCNKLYKYYGNVYDPV
Ga0208879_11390754F081450N/AMTQFEEKSCKVLGVIVFLLIVMTWLQISGCYSPPRPEMEGELIPDYIDDVDTSNLV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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