NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209862_1082827

Scaffold Ga0209862_1082827


Overview

Basic Information
Taxon OID3300026222 Open in IMG/M
Scaffold IDGa0209862_1082827 Open in IMG/M
Source Dataset NamePermafrost soil microbial communities from the Arctic, to analyse light accelerated degradation of dissolved organic matter (DOM) - Organic soil DNA_2013-061 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)538
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Permafrost → Permafrost Soil → Permafrost Soil Microbial Communities From The Arctic, To Analyse Light Accelerated Degradation Of Dissolved Organic Matter (Dom)

Source Dataset Sampling Location
Location NameArctic
CoordinatesLat. (o)68.6137Long. (o)-149.3144Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012694Metagenome / Metatranscriptome278Y
F092929Metagenome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0209862_10828271F012694GGAMTDEIKNPSNRVDPSHDGKFHAFWHERVVYENGRVKRFETESEAWEYLARCDLAGKIIH
Ga0209862_10828272F092929GGGGGVRGGKYYFSAAKHDPSPTVNRKSPNSQPKKTNGVERKNVRRQHIFKSDDWYETAVLSVTIKR

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