NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207989_1001753

Scaffold Ga0207989_1001753


Overview

Basic Information
Taxon OID3300026209 Open in IMG/M
Scaffold IDGa0207989_1001753 Open in IMG/M
Source Dataset NameMarine microbial and viral communities from oxygen minimum zone, Eastern Pacific Ocean - ETNP201406SV65 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10536
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (61.54%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Microbial And Viral Regulation Of Community Carbon Cycling Across Diverse Low-Oxygen Zones

Source Dataset Sampling Location
Location NamePacific Ocean: Eastern Tropical North Pacific
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006917Metagenome / Metatranscriptome362Y
F041140Metagenome / Metatranscriptome160Y

Sequences

Protein IDFamilyRBSSequence
Ga0207989_100175310F041140AGGAGMKWINTKVEFTWDSKKQKYVETDVQGYHYSGPIALCGGGGESFGSGELVSISGSFQGTPHVSMSVGDVLLSANITGLPDTDVVSEYLLWNYTGSAGISSQVTLATSSVESITTHSRAPSDGGMFSLVCENGRTDDILLTEAHPLLVWSGSADENVTGSGVWYFEYVEDIHPDFKLLSSSLEPIDITSITEFTGSVTQSFFRFDVEPYDVYFVEGILVHN
Ga0207989_10017532F006917GAGMKINTEKFIENLHKEINRRNVRKNRIFNTIYLVGVFIFDFIIDTGEWI
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Institute for Fundamental Biomedical Research
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