NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208815_1013755

Scaffold Ga0208815_1013755


Overview

Basic Information
Taxon OID3300026134 Open in IMG/M
Scaffold IDGa0208815_1013755 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1105
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-9.4986Long. (o)-25.9999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007722Metagenome / Metatranscriptome346Y
F039389Metagenome164Y
F058285Metagenome / Metatranscriptome135N

Sequences

Protein IDFamilyRBSSequence
Ga0208815_10137551F058285AGGAGGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVSSAVDTAGTSATADTFLNVSVNNAEYSKDV
Ga0208815_10137552F039389AGGAGGLAFLGDLGKVFGLGSSKQVLGDFGSTIGGIFGIEGAGRRAGEAIAGATSSLGTADQPLEQSAVPTPGADGKGAQETSRSGSQTVNIIDTARGNGMTSQAGAAAFTGLIPQLAKIFGNRAVQTGLGTGAGIIAGTMGGRGQERPVLTQSRRNKARVRQLVNFLGIEGTAEFLSQQGGVSVMPNDVIMLLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMTRTTRRAPAMRKSATTTLIKN
Ga0208815_10137553F007722N/AIGTIKKSIQTLNNRINGLNSPKLNDELLQYAIKQQNNVTDIRKTNIGG
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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