NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208815_1004674

Scaffold Ga0208815_1004674


Overview

Basic Information
Taxon OID3300026134 Open in IMG/M
Scaffold IDGa0208815_1004674 Open in IMG/M
Source Dataset NameMarine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3438_5245 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2257
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)-9.4986Long. (o)-25.9999Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F039389Metagenome164Y

Sequences

Protein IDFamilyRBSSequence
Ga0208815_10046742F001611AGGAGGMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRVASAVDTAGTSATADTFLNVSVNNAEYSKDVSVPALVTGQPFGVLNGSYTNNDLITTGSQRNRVLVRFTNDTSATRTIRCGVFIG
Ga0208815_10046743F039389AGGAGGLAFLGDIGKVFGLGSSKKVLGDAGEFVGDIFGIGGTGRRAGEALAGATSSLASGTADQPLEQSAVPTPGQDKGAQETSRSGSQTTNIIDVGRGQGQMAAGAGALTGLLSQAGRLLGTKGGQLALGTGAGFLASRVGMNGKERPVLTQSRRNKAKIRQLVNFMGIEGAAEFLTQAGGVEVTAGDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEAVSMTKTTRRASPMRRASSTTLIKN
Ga0208815_10046744F002374N/AMNEVLLYVCLVVASVSFFLCLYACARVGKFLNSVKGLDWDTVASLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLHYALKQQNNVTDINKNNVGG
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