NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207683_10823281

Scaffold Ga0207683_10823281


Overview

Basic Information
Taxon OID3300026121 Open in IMG/M
Scaffold IDGa0207683_10823281 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS M7-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)862
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Soil → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F062979Metagenome130Y
F064147Metagenome / Metatranscriptome129Y

Sequences

Protein IDFamilyRBSSequence
Ga0207683_108232811F062979N/AGPHTVSETPVPITTDSKLVNKLSIKPRLGQWSKVLIGGPGLLPDETNAMAVLYPVPNGGQADAFVLQDEGGQNTIDLSQIYIYATIPGDTPMVEAFEYKTL
Ga0207683_108232812F064147GAGMNRRELFQNILAAGAAVFAGGALRGQGITSYNGPEGGTRGTQLVTILGGPFHTSSQPNGVRPLTATPQFATYVRVQAHPGQQGKIAIGNSAMLTATGNIADSAFMELWPNWDGSADNGRSDTWIIADPKWLNTINVADIYIWPEIAGETPLVTAFQLV

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