NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207966_1022830

Scaffold Ga0207966_1022830


Overview

Basic Information
Taxon OID3300026119 Open in IMG/M
Scaffold IDGa0207966_1022830 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_NADW_ad_2500m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1877
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008692Metagenome / Metatranscriptome329Y
F015491Metagenome254Y
F103429Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0207966_10228302F008692N/AMKKKMIKRKQTEEEMYMPDSEEEFQADLAVQDMRYLHYCREQEEMYNDPVMNWSGLR
Ga0207966_10228305F103429GGAGMKKAVIEILYYGETVFCSRVDGKYMVREYEDDVEMGGSFYKTIEEAEARVIEYQNEIE
Ga0207966_10228306F015491GAGMKKTKRQRSAKVPARPQVTPRKWSKKTARIFDKQFDRFLYDELYVPTKKAWGENDIVKYERDMFGDSK
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