NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208391_1007842

Scaffold Ga0208391_1007842


Overview

Basic Information
Taxon OID3300026108 Open in IMG/M
Scaffold IDGa0208391_1007842 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_Bottom_ad_3770_LV_A (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3688
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002745Metagenome533Y
F077768Metagenome117Y

Sequences

Protein IDFamilyRBSSequence
Ga0208391_10078421F077768N/AHGGKTKSIIIKDYIDGMEKIMKKYSKPLRALLTDYTKKRTLDPDSDSGEKAMWDELVVNNFKIQKIHVGPEFADDFREDDDVEGFPFEVYDDAGDMVDYITRTVSRIKL
Ga0208391_10078423F002745AGGMKTFKSYLTEFAQLSTSDYVFDTHTDNSSSLKIPISGPMFKRIWPDTIRATVFHTTDLEGLEKLKKLEGGKKSISAFFSMMSRYMETGVATSGDAHVVVEMDADVLISAKDDIWSIVDNKGRRWVEVSWFENANITGPGFGKFEKDLNTLIKGLVVKHLGPIMGQTETRAANPFELWIMMKSHLKAGREGGGKRLSLVIKDYFDGIERILKKNKEVLGNIFYGYTKGKRMTDNSWDEQIVNNIKIKKVHIWPDSSKEMREEDEDEIKKQITDIKKWPIKAWDATIELEIYTRAVVAKEIGRTVK
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