| Basic Information | |
|---|---|
| Taxon OID | 3300026103 Open in IMG/M |
| Scaffold ID | Ga0208451_1008202 Open in IMG/M |
| Source Dataset Name | Marine viral communities from the Southern Atlantic ocean transect to study dissolved organic matter and carbon cycling - metaG 3321_4155 (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 1041 |
| Total Scaffold Genes | 4 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine Oceanic → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Southern Atlantic ocean | |||||||
| Coordinates | Lat. (o) | -24.9939 | Long. (o) | -35.9974 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005608 | Metagenome / Metatranscriptome | 395 | Y |
| F015491 | Metagenome | 254 | Y |
| F024888 | Metagenome | 204 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0208451_10082021 | F015491 | N/A | VPARAQVTPRKWSKKTARIFDKQFVRYVYEELYVPVKKAWGENDIVKYERNMFGDSK |
| Ga0208451_10082022 | F005608 | GGAG | MKTTKIEILKEGELIFGSPTVGKYFVRRYEDEKEMGGGFFKTKKEAHQHAREYKKSE |
| Ga0208451_10082023 | F024888 | GAG | MGTSTMDLKNIYKMVSAEVDARIKIDSKGKTPDEWAQLKGFEDWLGYAAWSRHTGGFYETAVQMLKAEWKKQDPEEFARQKKIQRDQSLREHSYINLPPEAWPTSVPNKNDFASNFIGNKKKKWQTVHKSNFTAEQLEKVYDDFGVGGEPVEYTW |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |