NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207965_1069771

Scaffold Ga0207965_1069771


Overview

Basic Information
Taxon OID3300026092 Open in IMG/M
Scaffold IDGa0207965_1069771 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_O2min_ad_571m_LV (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)737
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002348Metagenome / Metatranscriptome568Y
F008692Metagenome / Metatranscriptome329Y
F028526Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0207965_10697711F028526GGAMEDYLGPVKTKKDDLFLKLVKRVRKPDYTMHFMEDRYGRKAMFYNYKGVEIKTDECCILKATIAEHRRSKYDNGKPLTYLNRV
Ga0207965_10697712F002348GGAMKPNEKWVKYGGWLLSLLSILIGASFLWPHFHVALLGFALIYLGVRIFNFSTFDEYKEKRMKLLYKLMD
Ga0207965_10697713F008692N/AMAKRKGNKQKRQTKDEYYMPTSEEEFQADLVADDARYLQYCREQEEMYNDPVMNWSGLR
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