NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207648_10001445

Scaffold Ga0207648_10001445


Overview

Basic Information
Taxon OID3300026089 Open in IMG/M
Scaffold IDGa0207648_10001445 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M3-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26161
Total Scaffold Genes30 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014088Metagenome266Y
F069021Metagenome124N

Sequences

Protein IDFamilyRBSSequence
Ga0207648_100014451F014088GGAGMRKLRTSFWPLCGGYLIIVIVGLLSGGCALRPSPVQMYEGPSLPKEQVGIVRGACQTGAGLTIMIVRIDGKDIPNGCGDFALLPGDHQLELSAKRLAPRMDTPMIRSGSMTGAPPTPAGATQDEELPVIWASSSPLRVTCHLQAGQEVTIVGQVGTG
Ga0207648_100014457F069021GGAGGMRHMTSTLFMMIAVGVFAFVSGWTLNAQLIAGPHVVDLVETGQPHLVLAKSETRQRKEARQQIEGCPLAPNGDLGQQRITEQERSIMKGLVF
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