NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208880_1003334

Scaffold Ga0208880_1003334


Overview

Basic Information
Taxon OID3300026085 Open in IMG/M
Scaffold IDGa0208880_1003334 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3194
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031863Metagenome / Metatranscriptome181Y
F057337Metagenome / Metatranscriptome136N
F071664Metagenome / Metatranscriptome122Y

Sequences

Protein IDFamilyRBSSequence
Ga0208880_10033342F057337N/AMTYSDLAKMTIEELRNLNSMVVETIKSKKSVLALEKKDELYVGANVKVNHPKLAGKQLVVEKINRTKAVVKLLNGLGGYNVPLSMIELNG
Ga0208880_10033343F031863N/AMLDRKLLPVGNDLFVIKRKFKIENFEKVVKHFGAKEVCEAYHCETILRGRDGYFYLCDKVDDAKIIE
Ga0208880_10033344F071664N/AMIKKIKSKLLTYLFTDWVKSETDLETIKLTSQMLKNREIEITGIKPVLGFRAHYENQI
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