NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208880_1001102

Scaffold Ga0208880_1001102


Overview

Basic Information
Taxon OID3300026085 Open in IMG/M
Scaffold IDGa0208880_1001102 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S23_td_SurfaceB_ad_5m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5499
Total Scaffold Genes13 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (23.08%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010425Metagenome / Metatranscriptome304Y
F016009Metagenome / Metatranscriptome250Y
F078790Metagenome / Metatranscriptome116N

Sequences

Protein IDFamilyRBSSequence
Ga0208880_10011023F010425N/AMGWLGQQLDVVVVHKKPRKNAKIHLEVFQNTRVDDIISSAKRKPLIPKEHEILDIGVGNGFFEKYKKKYKLK
Ga0208880_10011027F078790N/AMSKVIGTKYGIEITKPWNQKMYDWNEIVGKLIKIDLYNKLEEFYKKGDREGMNKIANTFGPSYGEGYSNDDVFDSIFDDIAQIQNYQLNEELEWMVKDGLVKEPKYGFVGYDK
Ga0208880_10011029F016009GGAMTKEKRYHKEMRRYRIIEHELRGDSVFIVEWNDRWFLGLFGNWHPKFQTLKLEEAVDKIHRLVTLKLSK
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