NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208749_1044170

Scaffold Ga0208749_1044170


Overview

Basic Information
Taxon OID3300026077 Open in IMG/M
Scaffold IDGa0208749_1044170 Open in IMG/M
Source Dataset NameSeawater microbial communities from Saanich Inlet, British Columbia, Canada - Knorr_S15_td_DCM_ad_63m_LV_B (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)941
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From The Southern Atlantic Ocean Transect To Study Dissolved Organic Matter And Carbon Cycling

Source Dataset Sampling Location
Location NameSouthern Atlantic ocean
CoordinatesLat. (o)Long. (o)Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006217Metagenome378Y
F015102Metagenome / Metatranscriptome257Y

Sequences

Protein IDFamilyRBSSequence
Ga0208749_10441702F006217AGGAMIELLLSVIEEPNQFHKYCMEKHEHWTGRAACVQELRHAQRKLEVEELRQFLKENPHYRYPGMALPNGRIKPLDVCWGSDKTYYIGSDKVKRSKC
Ga0208749_10441705F015102GGAMESEDGKNPNTPFDDVTHWVGNLPRKDNDSTKRSTKRDTRRKTKSDILRKKLGVETKW

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