NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207678_10183981

Scaffold Ga0207678_10183981


Overview

Basic Information
Taxon OID3300026067 Open in IMG/M
Scaffold IDGa0207678_10183981 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1784
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → delta/epsilon subdivisions → Deltaproteobacteria → unclassified Deltaproteobacteria → Deltaproteobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007249Metagenome / Metatranscriptome355Y
F028464Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0207678_101839811F028464GAGMPWAGLGTPRKHPKFRHMDGSVFNARLYIDDRLVVDHHGMLDRALLHHPEVLEAASEFGDPYQVLAPVSHEAHGSGTAW
Ga0207678_101839813F007249GGAGGMGKKIREFMTHREPPEHIWMAREESAVIGTARMGQRMVPKIRPFDLLRSTLLTGNRARAMIFEGDSLRVATEYLAGQEAQLTRAADHDIVYLQFSGRSTIESESGVVEVAPGEIVLVPSAISHRSTGSDECLRVRVATQEFVTEGVDPEKPTIQRSFSVRSSEPISASNG
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