Basic Information | |
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Taxon OID | 3300026067 Open in IMG/M |
Scaffold ID | Ga0207678_10006178 Open in IMG/M |
Source Dataset Name | Corn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3 metaG (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 10651 |
Total Scaffold Genes | 12 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (66.67%) |
Novel Protein Genes | 2 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (50.00%) |
Associated Families | 2 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Michigan, Kellogg Biological Station | |||||||
Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F060400 | Metagenome / Metatranscriptome | 133 | N |
F081700 | Metagenome / Metatranscriptome | 114 | N |
Protein ID | Family | RBS | Sequence |
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Ga0207678_100061784 | F060400 | N/A | MVWGLAEVYARQVATAWLRLAAIWTRCDAGVLWPGVFALVGVLLGCGFTLLVASVTERWRTRRQFQRYMLDRRYTLYQQTLAAIDDLLYMRDDHADFGQAARTLTAAIVDLELLAPPEIVELADQCATLVLRRPGNPVDAAHARARLAAAARHDLATVPRPRGSMPRTTGRHARHSSRSADLPDRGIMGSVSPGLR |
Ga0207678_100061787 | F081700 | GGA | MTATKPQIPTSNGRRAGLDAVRHPSRADHPAAAPPALVRDIDRILLDHGIDLPKADIKAALAWLLSGSYGDMIGGPTNS |
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