NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207703_12401158

Scaffold Ga0207703_12401158


Overview

Basic Information
Taxon OID3300026035 Open in IMG/M
Scaffold IDGa0207703_12401158 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Switchgrass S1-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)503
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027334Metagenome / Metatranscriptome195Y
F031183Metagenome / Metatranscriptome183Y

Sequences

Protein IDFamilyRBSSequence
Ga0207703_124011581F027334N/AMMTYYRAWENQRFVRGLLREKQPELAAALEAAVREPPCLQCDRSRCAQADEPTLPRPSQLKRHLAPAGHTGGAGRAARLARSARGRKPQP
Ga0207703_124011582F031183N/ATRRVSSPAYYLGRPAALWLAAFARRPGPGPAGRASCASELRGPAADHA

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