NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207677_10848175

Scaffold Ga0207677_10848175


Overview

Basic Information
Taxon OID3300026023 Open in IMG/M
Scaffold IDGa0207677_10848175 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)821
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Kineosporiales → Kineosporiaceae → Kineosporia → Kineosporia babensis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F105099Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0207677_108481751F105099N/AYAPVAASPYSTAPLQRICANCGTASEPTRRFCRRCGTWLVTPSVMTPGPPDGLGKRLRRRYWGGGPYSGDLTRGTIAFRVLSIFLVLVVLVLVMSLLQWHPIRRTTDLVGHILGTGRVSNVTAQAVPADAFPGLPAAWAVDDVRGRGFATRWTLGGNGDPKSACVAPPPPQAAASSLVLTFPRMTNVREIGIEAGLPDGDPQIAARWRPQTLALYWPGGKCQPVQLAKEPGLQRFTVDAGLVNQVTIVMVAAYPPENGSSDRLDIGEVTFWER
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