NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207677_10522387

Scaffold Ga0207677_10522387


Overview

Basic Information
Taxon OID3300026023 Open in IMG/M
Scaffold IDGa0207677_10522387 Open in IMG/M
Source Dataset NameMiscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS Miscanthus M4-2 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1030
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizoplane → Epiphytes → Unclassified → Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007942Metagenome / Metatranscriptome342Y
F072059Metagenome / Metatranscriptome121Y

Sequences

Protein IDFamilyRBSSequence
Ga0207677_105223871F072059GAGMTAPSWQEDDPKNLSLIQSNATQLIAELRATAPERILPTPGELCRWHTRLYAGCDVPVAGYVGHFRGDPSIRELLDYEVGLGVRLK
Ga0207677_105223872F007942GAGMASRAVFPLRWRNERLRALTAEVAARLGISQNELIEQAIEHEVVARGAMLSDDLRAAADRLAELTQEQYERIQARSLEHFVAGEGLFEPVQARPTQRATVESIAVDRPLLAPDITAIYRSGRAEPA
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