NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207712_10149910

Scaffold Ga0207712_10149910


Overview

Basic Information
Taxon OID3300025961 Open in IMG/M
Scaffold IDGa0207712_10149910 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S4-4 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1800
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Unclassified → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameMichigan, USA
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003146Metagenome / Metatranscriptome505Y
F015803Metagenome / Metatranscriptome252Y

Sequences

Protein IDFamilyRBSSequence
Ga0207712_101499101F003146N/AQRRGYVFAAMPRRTSKKDTPAKLAGRMKRRWRVVLLRSKGETLGEVEAPDVASAKAAAAVQFDLDEIQRNRIMVQELG
Ga0207712_101499103F015803AGGAVQENATTGSRPARKFTPANIQKIKDWVAEGISREEIAKTLRVTVGSLQVTCSRLGISLRRRDLSGPPPIAGQRHTGTGFQIALTLECNGTTELPLTTSAIVHLKLEAEIRNLSMGQLLAEVVDMAIKKGMIEEILHKPTQERAAPLQRENA
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