NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207661_10830939

Scaffold Ga0207661_10830939


Overview

Basic Information
Taxon OID3300025944 Open in IMG/M
Scaffold IDGa0207661_10830939 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C7.1-3L metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)850
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F027281Metagenome / Metatranscriptome195Y
F068004Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0207661_108309391F027281N/AMVSTLAILFASGLSLFLVWAVLRPGLPAITSLEDWEAKRHKVHPEVFRILLDPSEEKYLQRALPPREFRVFQRKRLALALLTLDLVGRNAAMLMKLGQLAKMEGNPELAREAEELIHGALRLRVNLSLVQPCLWLKWLFPGWSLSLPAVEMPYEELLTY
Ga0207661_108309392F068004N/AVGTDLALEWIILTERSARFLQVCLLIVAIALMSRLGLTWQNYSVGIAAGFGVYAALDLALLELRAHLHAVTVTAFVLMRSAAYNLGVAIWAFYFLRPQGGKPVGSLPGTDLANWNNALTEHVNKWYRH
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