NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207646_10001158

Scaffold Ga0207646_10001158


Overview

Basic Information
Taxon OID3300025922 Open in IMG/M
Scaffold IDGa0207646_10001158 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)33510
Total Scaffold Genes41 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)25 (60.98%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009880Metagenome311Y
F044956Metagenome153N
F065498Metagenome / Metatranscriptome127Y

Sequences

Protein IDFamilyRBSSequence
Ga0207646_1000115811F065498AGGVTGCGCLLLIAALVGLGVFLIFGSTDTGEPIETAVALLAVISLGQRLALVPGRRVLVRSGDAQE
Ga0207646_1000115816F044956GAGVRRVRDGEIDDLIRNTIIWIAVVISLAVSYMLQTPAGGPYTDGLRHAFAVFLAIVIPLVSAIVVAAWVGVARKP
Ga0207646_1000115840F009880N/AMTNLLDVAFPHRTKRSFGAASFALIFLILLGEIELLVFIALAIVAHRLDLFMDLQPIVLPGACLVALSAAGVFWWRARQWTKQRIEMLNLWAQGGTAYGERLAKSRQQR
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