| Basic Information | |
|---|---|
| Taxon OID | 3300025922 Open in IMG/M |
| Scaffold ID | Ga0207646_10000085 Open in IMG/M |
| Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-2 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 125486 |
| Total Scaffold Genes | 124 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 82 (66.13%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: IMG/M) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan: Kellogg Biological Station | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F001350 | Metagenome / Metatranscriptome | 717 | Y |
| F010753 | Metagenome / Metatranscriptome | 299 | Y |
| F015567 | Metagenome | 253 | Y |
| F018147 | Metagenome / Metatranscriptome | 236 | N |
| F024071 | Metagenome | 207 | Y |
| F026234 | Metagenome | 198 | Y |
| F039971 | Metagenome | 162 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207646_10000085106 | F039971 | GGAG | MRIVAWLLVAAGLVVTGIGVAAALGQAGSGAQPWGNELSDNFVFIKALPFVLGFGIAVGLVMASTYGAKTRSDGAVRRWSPGTVFGHWVLTLGFVLALPTGMWQYLGGILDVNLPIPLYLFYRVHYIGASIVLFAVAAFVSYLWMTGDRSLLIRRGEWSRHLLGLAFELPPSLRGPYAKLLRIDLSQPRPPMGKFTFYEKVVELPSWSILLALITVTGLIKAGRYLIPVPGFVLWLASTLHVATMVAIVIKLLDHLRYTFTRWSLMGAITTTWMKERAPAVRQGAGERGSSAAGIAGGGD |
| Ga0207646_10000085111 | F026234 | N/A | VADGSHSALSGQTSGGESPLLVSTIVCAYTQAELPTPWLAIFHRFERTMAKAGLRIRVRLFPLEELPGAFEVLVVPPELEAAAQALQTGARIIVTSRAEAPAAADLLLREIERGETLYAEKVRQGEPKIMTHRGGDIL |
| Ga0207646_100000852 | F015567 | GAG | MTVLTIGVVCVALAFFAALAFGPGQRESQTPILTLSAPALPTMARPTFNTRPVPDRTLVLSSDDAVSTFRITSLGQTGLVNNDAVATTYRLRATGDLVTVAPLPQSEVLPYAAPLVLDRPLRIRGRPAEATFTVNGTTAVRWLENGTVFEMSSRTLTVAQLAELANRLR |
| Ga0207646_1000008532 | F001350 | AGG | MSLLTNGREELMDAIVLAVSQENADALLDGKRSTDHRALPPTRLPARAYLAVVGTGTVVGECVLGERAGRTAKGWTLPVTKPRRYRRARPLADFGLARTPRSFRYVAK |
| Ga0207646_1000008572 | F010753 | GAG | VDWIGAILERIRTMECPACGARLASCAVRGVTAEPQAIVVKLACTVCGESSVAIVERDGENAPALTEDDVLDAHDFLQTWHGPVAELIETA |
| Ga0207646_100000858 | F024071 | N/A | VLILIGTALAAAGLLAQRANEPAPTPAPTATPKPTGALIAPRPQLSALALPAGVTDVELSAFPDWLANEPPPASLRAVVAIRGTMGIASVEGLTVVNWTEHGVSYRLESLARSVPELVVLADSLR |
| Ga0207646_1000008599 | F018147 | GGAGG | MATIKLPEESQHNDMVKKVDAMIREISKSPRMSAATRALGLRPSILIGEHQELAHIMAKRGLLNLQNHMIGLAVAAARSAPYELYEHTRVLQLEYGLDSGQIVELAATVAHVTSINAFEKVVAAFNDNAPMRAQDPSTPVLVEVRQKLGSVPRYFLYMANDPRYTKIVLDREIATVHEGEVSRLNKELVAYATSVVNDGKLSILYRAEVLRSLGLTNEQLFEVTTVVSIFVKNAAFTTALQLEPTQA |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |