NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207652_10652461

Scaffold Ga0207652_10652461


Overview

Basic Information
Taxon OID3300025921 Open in IMG/M
Scaffold IDGa0207652_10652461 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)941
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018824Metagenome233N
F040669Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0207652_106524612F040669GAGGMTAATDTNWAPLEARLNGDVEVIREFMWMYEDKDTGVEYYKHSITRRYLLLHRDGRCFQQSLNGLVEVDFGTDLRRVREHPEEGR
Ga0207652_106524613F018824AGGAGGMATTLAVPVGPKKEKAKRRSRRGNPSTAENIRFFVGKPCRNKEAPQLEREVASEAEGLVAAFKTDGSLFLLSEYTVMQRIESGRVTLGKEPAAAASQRVSTVNAS

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