NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0207652_10038290

Scaffold Ga0207652_10038290


Overview

Basic Information
Taxon OID3300025921 Open in IMG/M
Scaffold IDGa0207652_10038290 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C6-3B metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4064
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Betaproteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006389Metagenome374Y

Sequences

Protein IDFamilyRBSSequence
Ga0207652_100382903F006389N/AMALALSLPTVESRPANPPETRFAKVGPWLTLVAQRGPSDAARVIGDALAATNRVAMSDAKRLELAEAYWSTALDLWPQLEKLFVRASHPLAGEALEAAKAALTLAHELSVAFKHLLASESQKRLSLGGSRLLTALILRCLQCFARILSTSYLSYSPVPQRTWHDAHAVYAFARERGLHLVAIAGGDSETTPELVYVQALLLALANPYGFHPGQLAHVLRYLASHAHIAKLTDVAPVHRMAKAVAIVPVGHDFPPFSANKGGSIEGSRLFLLTYDLAFGLQEELRALENGGPVPDGVGRSQHSRDNYITLLRRLLRQWAIPPARQFNRLPSRARVTMCAGLACVWQYSRSQATHAVPTISAMPTLTQCQVINHTPAGYALRQASEAPCTLRIGELIALRVEGRATLQVAMVRWFRNTLKSSGLEFGCELLSEMPEAAAAAAEDGAEASVQRVVVLPEDSDPEHGDTPAQLIVPADSFGLEQAITLRRGTETGFAVLTKLVEQGPGFELYEFVAVG
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.