| Basic Information | |
|---|---|
| Taxon OID | 3300025910 Open in IMG/M |
| Scaffold ID | Ga0207684_10006693 Open in IMG/M |
| Source Dataset Name | Corn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS K5-50-1 metaG (SPAdes) |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10473 |
| Total Scaffold Genes | 16 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 10 (62.50%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Michigan: Kellogg Biological Station | |||||||
| Coordinates | Lat. (o) | 42.3948 | Long. (o) | -85.3738 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002143 | Metagenome / Metatranscriptome | 590 | Y |
| F025584 | Metagenome / Metatranscriptome | 201 | Y |
| F035065 | Metagenome / Metatranscriptome | 173 | Y |
| F037102 | Metagenome / Metatranscriptome | 168 | Y |
| F048436 | Metagenome | 148 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0207684_1000669310 | F037102 | AGGAGG | MNESTLEFTDQILQPVMHEKILLRAAELIALGWTQRTAARDAAGQKVRSTAPQATAWCVVGAVDRALYELLNVDVYALLGLEVDAYDTAPCPSELLRALRRPLQHVLGRRDLAHWNDHGCPGPAAAEQLLREAAATAARW |
| Ga0207684_100066934 | F048436 | AGGAGG | MSSLKRWRRVGQGQFHKWEQAGEEFEGTWRGAHDGRYGPLGTLETSERLITFPLPAALLDRLRRVGEGAEVLIQYTGMQTSKTGRSFKGFEVYVAGDGALAEPAQPAASSRQVESQVPDGHQREG |
| Ga0207684_100066936 | F002143 | N/A | MAHTPDSNDAIQRFLGQWSPLTRAEALHLALQSLRDRVEPDRVLACELAWEVHAKGYWSQVRNADGTTYPTEEDYFRHVLGLASWRTAYKRLAIGRMLTRFEEPERSLLRSSLAAVGLAKATVVAPAIERFEEWRTWLQCASELSTVLLQARVSEALDALPRGREPAPPGERFRRDVLSAMPDIEAMELVERFFHLGKRVVGSPNPIAIFLAGCRECLPEWEVQAAKRPQGPSSASGSPVCPRGQNSV |
| Ga0207684_100066938 | F025584 | GGA | VGDPRLDEPRRWGVFWIHHEAEELLVHHRATIQADDARAVVVTLLASGRVPPLQATLFDIDGVTGRPILHRFWGTAYRRDDTVYLILFINERCLVLALSG |
| Ga0207684_100066939 | F035065 | GGAGG | MTEREVEAISDFLRHFGSFGCRQICVRRSEPKPRTPEDVGRVVLESLAAWRAEGLDAELLYKVATIAIHFDAFKLPWSMCMPACCWPWGALEPACPPGPGRPLTGAQLQQALLRAVPIGPPAAPDAPFPDDLDEDLKRTGLAP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |