NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207705_10352156

Scaffold Ga0207705_10352156


Overview

Basic Information
Taxon OID3300025909 Open in IMG/M
Scaffold IDGa0207705_10352156 Open in IMG/M
Source Dataset NameCorn rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS C1-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1134
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria → Actinomycetia → Propionibacteriales → Kribbellaceae → Kribbella → Kribbella pittospori(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Corn Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029142Metagenome / Metatranscriptome189Y
F061827Metagenome / Metatranscriptome131N

Sequences

Protein IDFamilyRBSSequence
Ga0207705_103521561F029142GGAMRTLAAVTAVCATALMGVAPAATAATVPKLRLVGTQPLVVRGESFKPGERVVVTALTPIGPKRVVVRATVRGRLGATFRLPSQPCGKAFAIRATGVLGSRAVV
Ga0207705_103521562F061827GAGMGIKDTVLGWLSSTPDKEDELEDAEADELTREYSADRADTVAGFELGGGRGDFESDQDAPRR

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