NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207685_10097128

Scaffold Ga0207685_10097128


Overview

Basic Information
Taxon OID3300025905 Open in IMG/M
Scaffold IDGa0207685_10097128 Open in IMG/M
Source Dataset NameCorn, switchgrass and miscanthus rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - LAR L11-1 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1253
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Loam → Agricultural Soil → Corn, Switchgrass And Miscanthus Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan: Kellogg Biological Station
CoordinatesLat. (o)42.4774Long. (o)-85.451Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010286Metagenome / Metatranscriptome306Y
F010963Metagenome / Metatranscriptome297Y

Sequences

Protein IDFamilyRBSSequence
Ga0207685_100971281F010286N/APLLSFPRPPGAAPRRSDTCISAGPPMLCAVGEGDGKAEMTDRKVPSRGQTATFSVNGVKRGDGVLLLYPDELTVVNTRSIGTWVYVLVPAIYLAVHFYLFHTIGWGFLAVWYAAGWWVWQGMGRRLAARKVAAGGDGVTVIPLDQVTSVECRKARKGANWLGIRKMTVTTADGTEYKFDGLMEQWHDHLARALAAHG
Ga0207685_100971282F010963GAGGMTDTEETLTESGIPIRSQSARFRVSGTGRGRGIVLLYPDKLAAVNSSAQLWGIFFGPIVLIALSHLLFHDIRELGSAVGVLAGGWIGQGIGKRLAATRVAANRDGVRLVPLDLITSVQFSGPAGIRGWLTGQVLLVTTADGAEYEFRGMMDGWQAAIAGALTVRGREVHAVRDAITVMPQVMGGEG
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