NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207680_10110573

Scaffold Ga0207680_10110573


Overview

Basic Information
Taxon OID3300025903 Open in IMG/M
Scaffold IDGa0207680_10110573 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1781
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041272Metagenome160Y
F105610Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0207680_101105731F105610N/ALRPVSEAVEETQPVLYWSAAFAVPPYTVSIADERGQVISRAQGIQNTSWMVLTPLRRGGEYTWQVTVMGASESASFRVLDDGQAMLWKAMLAAHQDSPLLIGLVAQELGMLAIAEREYTALTKAYPDSSTAALLLNNVSELRNR
Ga0207680_101105733F041272N/ACLAGCRNNVVPGAFGPESYSKESRRPSALIKTSICNRGRIVHLKLLRVCGLMALSAVGMYAMPPTTGAQYWSTNPNLDCTAFHALISEIPLASGGKGYACFVSGTFPWLAAGGSWSTSIRIDAPASGAIGMDLGFFQDGQRFSMDTVSGNGGVPTSSNLVSLALSANQPAEIHLLGASTDAPRYSNTQTGLVYGVFYCPDAATCATVLPQLLYSSAPIKPWTLSVPLSWDTTYSSFQPKGIGPRWSAAGINDATHLISFAICNQSRVETAFTVRVFDGNGSLVGQATTPSIPVVGTRGFLLTDVIRTPLPPGILKVTVDGGSGLSSVTFLQFEGDAATSLQVAYDGPLSPIP
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