NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0207680_10048554

Scaffold Ga0207680_10048554


Overview

Basic Information
Taxon OID3300025903 Open in IMG/M
Scaffold IDGa0207680_10048554 Open in IMG/M
Source Dataset NameSwitchgrass rhizosphere microbial communities from Kellogg Biological Station, Michigan, USA - KBS S2-3 metaG (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2522
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Rhizosphere → Soil → Unclassified → Switchgrass Rhizosphere → Corn, Switchgrass And Miscanthus Rhizosphere Microbial Communities From Kellogg Biological Station, Michigan, Usa

Source Dataset Sampling Location
Location NameUSA: Michigan, Kellogg Biological Station
CoordinatesLat. (o)42.3948Long. (o)-85.3738Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019150Metagenome231Y

Sequences

Protein IDFamilyRBSSequence
Ga0207680_100485542F019150GAGGVGSVIVHGKLGGLIFGFEIDPDGTEGLLCEAVPNSDGTVTAAVETFNQATGRIIRILGKTNTQDDLIAWTVAGSVGLIEREKVKGLFTIKRTFSVIDPLSGNEINGNWTPPIDHKQIVNQVKPAFDGSPNVAVYALSVSTSLNPVVFSSNLRDNTFGPAIEITDLNFTTEAPPVIAFDPIRNQAILGHDKPSPFIEPPLIGFVDLATGSFDVKTGLGLGVINGVAVDTEDGILCTDTSFDSAVQFYDLSDFSGISVLLPGADPQTSTASGGDIEFDSINKLFLVAQPFSDGQLNNGSSIQVYDLAGNLVESIDGLNFQGGFNVFPIHITLNP
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