Basic Information | |
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Taxon OID | 3300025897 Open in IMG/M |
Scaffold ID | Ga0209425_10184002 Open in IMG/M |
Source Dataset Name | Pelagic Microbial community sample from North Sea - COGITO 998_met_05 (SPAdes) |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1131 |
Total Scaffold Genes | 3 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → Viruses → Predicted Viral | (Source: DeepVirFinder) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea |
Source Dataset Sampling Location | ||||||||
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Location Name | Helgoland, sampling site Kabeltonne | |||||||
Coordinates | Lat. (o) | 54.184167 | Long. (o) | 7.9 | Alt. (m) | Depth (m) | 1 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001205 | Metagenome / Metatranscriptome | 748 | Y |
F034593 | Metagenome / Metatranscriptome | 174 | Y |
F038303 | Metagenome / Metatranscriptome | 166 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0209425_101840021 | F034593 | N/A | MQGQRERTTDTMDRYRVIERFAKQNNWTQGLELGVWVGVTTFWLMKNTTVNMTCVDAWEVQDDNPEYDWQYNKKPVFQGGKLLRLEEFKNEGQVWNHNANEQKFRDDAEQWGDR |
Ga0209425_101840022 | F001205 | N/A | MFKDVIGDWPTHDKFILTSCDGKYFDQYFPRFYKTFMEHWRLPIHVHIIDPTQDSRYKLDRLPVSYTHCTTDKSVLKFPYSYVTYCQAQRFILLGHNLSKNQSVIVADVDAYALREPNDQQRNLVHSNMAFTEYNGRLMATFCNFHHSRQTSAKEAAVKMQQLIEDTDTVGVDQLVIKEVFKKLPFNILTHGEWIRHLDVKTKDDIAEHGKCLIYHEKGCRGKEKGLQTQWTDIGL |
Ga0209425_101840023 | F038303 | N/A | LTITTANRTISSLSNTLLNNMNQHDRDEIARQLDSNESANTLS |
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