NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0208916_10064482

Scaffold Ga0208916_10064482


Overview

Basic Information
Taxon OID3300025896 Open in IMG/M
Scaffold IDGa0208916_10064482 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - DEBay_Spr_0.19_<0.8_DNA (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1517
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.283Long. (o)-75.3633Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001872Metagenome / Metatranscriptome623Y
F002794Metagenome / Metatranscriptome529Y
F010535Metagenome / Metatranscriptome302Y

Sequences

Protein IDFamilyRBSSequence
Ga0208916_100644821F001872N/ALGVATAKANPDARPYTGNSDGASAGPRAGMNEWIKQALAVSNGALWNNGSWGIRDMRGSAGTLSVHATGRAVDLSYRKTEKHQQAGRLNACSFIDVVVANANTLGVECILDYFPAPYGRAWRCDRQAWKKYSKPTIHGAPGGDWFHVEITPQAADSVIFVKAAFLKVFGEIPPKA
Ga0208916_100644822F010535AGGAMTDIQIFDYSVYTGVMDNGQEILVQIFTNPESGKFLMGQIAFRSATSSWGQPIPLEKR
Ga0208916_100644824F002794GGAGMSEGSAWNQGEVTEETRKMILEQTAMTNHTMAMFGLIDDIMAISKNPHASIIQRLKTMKNQLSLEDPMPLYDVTTLDLAIKALQAH
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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