NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0209335_10085877

Scaffold Ga0209335_10085877


Overview

Basic Information
Taxon OID3300025894 Open in IMG/M
Scaffold IDGa0209335_10085877 Open in IMG/M
Source Dataset NamePelagic Microbial community sample from North Sea - COGITO 998_met_09 (SPAdes)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1704
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (85.71%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Neritic Zone → Unclassified → Pelagic Marine → Pelagic Marine Microbial Communities From North Sea

Source Dataset Sampling Location
Location NameHelgoland, sampling site Kabeltonne
CoordinatesLat. (o)54.184167Long. (o)7.9Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002318Metagenome / Metatranscriptome571Y
F006528Metagenome / Metatranscriptome371Y

Sequences

Protein IDFamilyRBSSequence
Ga0209335_100858772F002318GAGGMKAKDYKSITNILESQNKGKKFYDFMDMEDVKYRIKEDIVPLPKQYFNNIVKLIKGEKXYYLVRL
Ga0209335_100858774F006528AGGAMKDKEKHLIKDIEKLAIETFKNIIEGSRSINGVTWNRIKNYKRKDQIECSKILK

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